PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g13540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 172aa    MW: 19514.4 Da    PI: 9.3625
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g13540genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002389111123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++Cg  Fs    L  H+r+H
  CA11g13540  89 HKCSICGLEFSLGQALGGHMRRH 111
                 79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.55E-848111No hitNo description
SMARTSM003551.24870IPR015880Zinc finger, C2H2-like
PfamPF139126.8E-134872IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5564875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-486115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.08989111IPR015880Zinc finger, C2H2-like
PfamPF139125.8E-1089114IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.20189116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTSMKRSRED YMQIEAEAMA NCALMLLSRF NNNNNISSSS TDYHHNDFEC KTCYKRFPSF  60
QALGGHRASH KRPKLAGEFL EEVKKNKLHK CSICGLEFSL GQALGGHMRR HRDETNKTSA  120
EKAMVPILKK SNSSKRIFCL DLNLTPRDDN VDDLKLWPTA PVASPVLRCF F*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546672.11e-127PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD41e-38ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM1B9I98e-93M1B9I9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000402062e-92(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-40C2H2 family protein